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Bloom filters: real-world applications
(llimllib.github.io)
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This data structure uses a 2-dimensional array to store data, documented in this scala implementation: https://github.com/twitter/algebird/blob/develop/algebird-core/src/main/scala/com/twitter/algebird/CountMinSketch.scala. I’m still trying to understand it as well.
Similar to your idea, I had thought that by using k bloom filters, each with their own hash function and bit array, one could store an approximate count up to k for each key, which also might be wasteful or a naïve solution.
PDF link: http://www.eecs.harvard.edu/~michaelm/CS222/countmin.pdf