You might try adding :rw after each of your volume paths, like this:
volumes:
- /path/to/appdata/config:/config:rw
My honest suggestion would be to ditch Duplicati for Duplicacy. Duplicacy is one time payment, but it's much more polished than Duplicati. I actually had major issues with recovering files from Duplicati; sometimes it would work and sometimes it wouldn't. Not ideal for something as critical as backup software.