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Flatpak integration is still not great
(lemmy.world)
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Sandboxing is not the main feature of Flatpak/Snap, being able to ship an app for various distributions without having to configure them separately is. Docker/Podman can do that, but then you would actually be shipping an entire distro.
Regarding docker/podman that's why I wrote depending on usecase, for servers it makes sense to distribute because of scalability, on a single user OS it does not.
From what you write I guess that nix does the distribution part of flatpak, so that seems fine, there's probably a catch/limitation somewhere, there usually is, but it could be an acceptable one.