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Dotfiles matter! Please stop dumping files in users’ $HOME directories.
(dotfiles-matter.click)
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Linux is a family of open source Unix-like operating systems based on the Linux kernel, an operating system kernel first released on September 17, 1991 by Linus Torvalds. Linux is typically packaged in a Linux distribution (or distro for short).
Distributions include the Linux kernel and supporting system software and libraries, many of which are provided by the GNU Project. Many Linux distributions use the word "Linux" in their name, but the Free Software Foundation uses the name GNU/Linux to emphasize the importance of GNU software, causing some controversy.
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The best way to handle this is to have the next version move the old directory (if it exists) and then start reading from there.
That way it's in compliance from then forward.
A UI notice is nice but will probably be ignored.
That could break some peoples' dotfile management, e.g. symlinks or git repos. I'd say deprecation notice and reading from both, at least for a while, is better.