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Flatpak vs Snap vs Native Packages
(kbin.social)
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Afaik snaps can't share depending packages, making it store the same dependency multiple times. Flatpak can share the depending package+version, sharing it to every app it needs and store it once.
The Golden advantage I see is not having issues installing multiple versions of the same dependency, which would be kinda hard for a native system depending on the type of package an app is depending on. Like Python and Java could easy have multiple same versions on a native system, but other things may be too difficult to realize except you use Flatpak.
So the main point is comfort I guess, it just works on all distros unrelated if a dependency doesn't exist for the distro or is too old/new.
Not sure how secure Flatpak is. But 2 serious scenarios are existing to use it: You want to isolate the app from system for security. You have an immutable read only OS and want to easily install packages.