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Selfhosted
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Silly question but what is your question? Yes you can run jellyfin in docker in a VM on Proxmox. Personally have a similar setup and I don't use GPU encoding or decoding.
Also GPU passthough to a VM with vfio is generally pretty good and stable so if you want GPU acceleration it shouldn't be to hard. I personally run a virtual machine for gaming that has a GPU and USB controller passed though to it. I can't even tell the difference in terms of hardware performance
There seem to be many ways to reach the same goal:
I try to find the best way for me.
Docker is the easiest to maintain.
I used to use Proxmox but switched to Unraid which has a nice UI to manage Docker containers. That's one thing I wish Proxmox would add.