It sounds a bit more than just restructuring though, these bits in particular talk about dissolution

it was decided to dissolve the Zapatista Rebel Autonomous Municipalities (MAREZ) and the Good Government Boards. The Caracoles remain, but they will remain closed to the outside

after a long and profound critical and self-critical analysis,… it was decided to dissolve the … Autonomous Municipalities and the Good Government Boards. We will discuss the reasons and process by which this decision was made little by little

I'm not trying to be glib about this, and obviously it would be a net positive if Zapatistas managed to succeed. However, what happened highlights the problem with the approach of building autonomous communities with the larger context of a capitalist state. And this is precisely the approach I see Anarchists advocate for.

Long term success is only possible when the end goal is for the workers to build their own state and to be able to defend it from both internal and external threats. The same problems that Zapatistas encountered will also be encountered by other movements based on similar principles.