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The SBC is only running with a SD Card and nother else plugged in. But I suppose my best bet is to run a script with rsync and save what I need using rsync over SSH to my storage server
The only down side I can see with that setup is that should the sd card fail you'll have to reinstall the OS on a new card and then install and configure all the programs you had before. For my set up that would be a pain in the neck but it depends on your specific use case.