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I'm sure we've been over this. It's just a question of time until those solutions become unmanageable at scale and for the more professional users and then a magic proprietary solution that fixes it all will appear. Exactly the same that happened with Docker/DockerHub/Kubernetes.
Use BRTFS/ZFS snapshots to rollback if anything breaks. Either way you can use LXD/LXC as containers to run your stuff that are easy to setup and will resolve the root filesystem issue.