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/run/user/1000: What to do with it?
(lemmy.ml)
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There is a simple trick, as a basic user, do not ever run your (gnome) file explorer as root and if a permission error (requiring "escalation") pops up you shoud double check what you are doing.
I think most graphical file mangers also keep most of the weird/important/system folders away from user and you have to directly navigate to them.