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Mouse cursor changes size when it hovers over some applications
(sh.itjust.works)
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Same issue here, Plasma 6 has broken Flatpak theming in general for me.
Both the cursor size differs between native and Flatpak applications and also the dark mode is not applied correctly in some applications.
For example, VS Code in Flatpak has white context menus even though dark mode is activated:
Yeah, I'm also pretty sure that this is a Flatpak issue — an update for one of the affected Flatpaks came out, and it's issue with the cursor is now fixed. I suspect that when an update for the other applications rolls out, then they will also be fixed. I'm not entirely sure what went wrong in the Flatpaks with Plasma 6, though — it's rather interesting. Maybe something got changed in one of the desktop portals?