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What is the best way to have caddy run at boot with env file, without running as root?
Create a user, and then a systemd unit for it, under ~/.config/systemd/user/ with contents like these:
Adjust the paths in the arguments. It will require systemctl daemon-reload for such unit to be available for enabling and starting it...
the default systemd service will run caddy as the caddy user i think
otherwise you can choose any user to run a systemd system service