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I don't recall Windows ever touching linux bootloader but I imagine it could if you had it scan & repair any potential boot problems. Installing any OS can result in bootloader being changed so I've always installed Windows first & then Linux, especially if only have a single drive. When dual booting with dedicated drive for each OS I install in the same order but I change the drive boot order in BIOS between installs as well. After installs are done I leave drive boot order so Linux bootloader is default. I can change the drive boot order if I ever have a need to use Windows bootloader.