The back bed marigolds might not be getting enough sunlight, that could cause leaf discoloration and failure to thrive. While they're small, it is a good time to transplant them or pot them up and put them in the sunniest spot you can find.
Do I need to pull these out of the bed and into pots, or just start over?
Transplant them "as is" into pots, if there's no other way to get them into a spot that is sunny for most of the day. No need to start over. You could also provide them with more light where they sit now, by pruning back any tree branches or taller plants that are adding shade, etc.
That's one of the fundamental issues with my bed. It's shaded by massive oak trees in the morning. From noon until dusk, it should be getting a lot of sun, though. I'm thinking it's shadier than I thought. The tomatoes and cucumbers are okay, if small, as are my herbs, but I guess the marigolds are just not getting enough. Could it be a need for fertilizer, though, or maybe too much or not enough water?
Morning sun is also critical for all the plants you mentioned. They're sun addicts.
It's kind of frustrating to me. I've got plants just a few feet away that seem to be getting enough light. My best tomato is in that spot and putting on a lot of fruit and it's about four feet tall. It's the same situation, roughly, but I guess that they're getting just enough more direct sun to thrive.
I'm thinking I need to go to more shade tolerant stuff for the bed next year, and I need to put anything that needs more sun in that one spot a few feet away that seems to get enough light.
Of course, what I do have in the bed now is largely healthy, especially the mint and the rosemary. The tomatoes are healthy, if small and slow to grow. However, I've also been thinking the shade may be a benefit when the southern sun gets harsh and extremely hot this summer.
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