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That's a valid point, though it looks like Popfile's installation instructions call for manually installing libraries, presumably current ones. I think it processes only text, not PDFs or images, which are traditional sources of vulnerabilities. I'm fairly certain it doesn't attempt to execute Javascript. It is, itself written in Perl, which is memory-safe.
It's worth considering security because there's so much malware out there trying to spread indiscriminately, but Popfile is less vulnerable than an Android app (which bundles its dependencies) or anything written in C (which is subject to all kinds of memory management bugs).