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It's the multiple volumes that are throwing it.
You want to mount the drive at
/media/HDD1:/media
or something like that and configure Radarr to use/media/movies
and/media/downloads
as it's storage locations.Hardlinks only work on the same volume, which technically they are, but the environment inside the container has no way of knowing that.
I can't believe it, thank you very much!
I didn't realize this when I first set up Radarr/Sonarr and they ended up copying every single file instead of hardlinking. By the time I realized, I had like 400gb of duplicate files. Ended up running fclones and getting it all back.