The American takeover meant the Philippine Revolution bled into the Philippine–American War, as Filipinos fought for their independence, but U.S. forces, led by military governor General Arthur MacArthur Jr. had the upper hand by 1900. MacArthur felt the commission was a nuisance, and their mission a quixotic attempt to impose self-government on a people unready for it. The general was forced to co-operate with Taft, as McKinley had given the commission control over the islands' military budget. The commission took executive power in the Philippines on September 1, 1900; on July 4, 1901, Taft became civilian governor. MacArthur, until then the military governor, was relieved by General Adna Chaffee, who was designated only as commander of American forces. As Governor-General, Taft oversaw the final months of the primary phase of the Philippine–American War. He approved of General James Franklin Bell's use of concentration camps in the provinces of Batangas and Laguna, and accepted the surrender of Filipino general Miguel Malvar on April 16, 1902.

Photo from Library of Congress.